Critically Endangered Bats Rediscovered in Rwanda

Scientists find living fossils after four decades of silence.

©Dr Jon Flanders via Bat Conservation International

Deep within Rwanda’s cloud forests, an extraordinary discovery has rewritten the story of extinction. A team of international researchers has found something that wasn’t supposed to exist anymore. The critically endangered Hill’s horseshoe bat (Rhinolophus hilli), silent for forty years, has been calling out in the darkness all along.

Most scientists assumed this species had vanished forever, another casualty of habitat destruction and human encroachment. Yet persistence and cutting-edge acoustic technology have revealed the remarkable truth hidden within Nyungwe National Park’s ancient caves.

1. Hill’s horseshoe bat emerges from four decades of presumed extinction.

©Drew Bantlin via Africanparks.org

Nobody expected to see these bats again. The last confirmed sighting occurred in 1981, leaving researchers to wonder if the species had quietly slipped into oblivion. According to Bat Conservation International’s Dr. Jon Flanders, the team initially feared they were documenting a ghost, searching for evidence of something that no longer existed anywhere on Earth.

Two individuals appeared during a January 2019 expedition, their distinctive horseshoe-shaped noses and comically exaggerated facial features immediately recognizable from decades-old field guides. These living specimens represented not just scientific triumph, but hope that other “lost” species might still persist in overlooked corners of protected landscapes.

2. Acoustic detection reveals a hidden population surviving in tiny territories.

©Image license via Wikimedia Commons/Bureau of Land Management

Rangers deployed sophisticated bat detectors across Nyungwe’s cave systems, recording nearly a quarter million sound files over nine months of patient monitoring. Each echolocation call carries a unique sonic fingerprint, allowing researchers to identify species from their vocalizations alone. The acoustic surveys revealed Hill’s horseshoe bats calling from eight distinct locations within an extraordinarily small range, as reported by the Global Biodiversity Information Facility dataset publication.

These findings completely transformed understanding of the species’ current status. Rather than extinct, the bats had been living undetected in a concentrated area, their calls echoing through cave systems where human ears rarely venture to listen.

3. Genetic analysis confirms species authenticity and reveals conservation priorities.

©Image license via Canva

DNA extraction from wing tissue samples provided definitive proof that these rediscovered bats were indeed Rhinolophus hilli, not closely related species that might have caused mistaken identity. Laboratory work at CIBIO-InBIO, University of Porto, confirmed genetic markers that distinguished them from other horseshoe bat populations across Africa. As discovered by the multinational research team, the genetic evidence validated decades of taxonomic classification and reinforced the species’ critically endangered status.

Tissue samples also revealed important information about population health and genetic diversity within the surviving group. Limited genetic variation suggests the population has remained small for extended periods, making conservation efforts even more critical for long-term survival.

4. Nyungwe’s unique ecosystem provides the last refuge for multiple rare species.

Damara woolly bat © Paul_Webala via iNaturalist

This montane rainforest represents one of Central Africa’s most biologically significant landscapes, supporting exceptional biodiversity within its 1,019 square kilometers. The rediscovery expedition uncovered additional rarities, including the first documented occurrence of Lander’s horseshoe bat within park boundaries. Damara woolly bat also appeared for the first time in Rwanda since the early 1980s.

Such discoveries highlight Nyungwe’s role as a biodiversity ark, preserving species that have disappeared from surrounding regions. The park’s elevation and climate create microhabitats that support organisms found nowhere else, making protection of these ancient forests essential for regional conservation.

5. Cave systems reveal complex underground networks supporting bat communities.

©Image license via Wikimedia Commons/Rich Brooks

Researchers mapped extensive cave networks throughout Nyungwe, discovering intricate underground passages that provide ideal roosting conditions for multiple bat species. Temperature stability and humidity levels within these caves create perfect microclimates for species adaptation over thousands of years. Mining activities in other regions have destroyed similar cave systems, making Nyungwe’s intact networks increasingly valuable.

Underground surveys revealed how different species partition cave resources, with some preferring deep chambers while others roost near entrances. This spatial organization reduces competition and allows multiple species to coexist within the same cave system, creating complex ecological relationships that researchers are still working to understand.

6. International collaboration demonstrates the power of persistent fieldwork.

©Image license via Wikimedia Commons/CTA ACP-EU

The rediscovery resulted from sustained partnership between Bat Conservation International, Rwanda Development Board, and Rwanda Wildlife Conservation Association. Each organization contributed specialized expertise, from acoustic technology to local ecological knowledge accumulated over decades of field experience. Rwandan park rangers played crucial roles, identifying cave locations and conducting months of audio monitoring.

This collaborative approach proved essential for success in challenging terrain and demanding conditions. International funding combined with local expertise created the perfect framework for long-term species monitoring that individual organizations could never achieve alone.

7. Small population size raises urgent concerns about species viability.

©Image via Canva

All confirmed detections occurred within an extremely limited geographic range, suggesting the entire global population occupies less than a few square kilometers. Such restricted distribution makes the species vulnerable to localized threats like disease outbreaks, habitat disturbance, or climate changes affecting their specific cave microenvironments.

Population genetics research indicates low numbers have persisted for extended periods, potentially reducing genetic diversity and adaptive capacity. Conservation biologists worry that even minor environmental disruptions could push this rediscovered species back toward extinction despite protective measures.

8. Climate change threatens montane forest habitats across Central Africa.

©Image license via Wikimedia Commons/Dpiskho

Rising temperatures and changing precipitation patterns pose significant risks to Nyungwe’s cloud forest ecosystems. These high-elevation environments depend on consistent moisture and temperature ranges that climate models predict will shift dramatically in coming decades. Species adapted to specific microclimatic conditions may struggle to survive environmental changes.

Forest composition changes could alter insect communities that provide food resources for Hill’s horseshoe bats. Temperature increases might also affect cave microclimates, disrupting roosting conditions that have remained stable for thousands of years and supported bat survival through previous environmental fluctuations.

9. Mining activities in surrounding regions eliminate potential habitat.

©Image license via Wikimedia Commons/Fairphone

Historical mining operations have destroyed cave systems throughout Rwanda and neighboring countries, removing roosting sites and foraging areas that may have supported larger bat populations. Active quarrying continues to threaten remaining cave networks outside protected areas, fragmenting habitat and isolating surviving populations.

Economic pressure to extract minerals often conflicts with wildlife conservation priorities, creating ongoing challenges for species protection. The contrast between destroyed mining sites and intact Nyungwe caves demonstrates how rapidly industrial activities can eliminate habitats that required thousands of years to develop.

10. Global data sharing accelerates conservation science and species protection.

©Image license via Canva

Open access publication of survey data through the Global Biodiversity Information Facility ensures research findings reach the broadest possible scientific audience. This transparent approach allows other researchers to build upon discoveries, compare findings across regions, and develop more effective conservation strategies. Data accessibility removes barriers that often limit collaborative research efforts.

International databases create permanent records that document species occurrences and support future research priorities. When data remains freely available, conservation efforts can continue even if original research teams change or funding priorities shift, ensuring long-term continuity in species monitoring and protection efforts.